Rfam Watchlist
- 5S ribosomal RNA
- 5.8S ribosomal RNA
- U1 spliceosomal RNA
- U2 spliceosomal RNA
- tRNA
- Vault RNA
- U12 minor spliceosomal RNA
- Hammerhead ribozyme (type III)
- Nuclear RNase P
- Bacterial RNase P class A
- Bacterial RNase P class B
- Small nucleolar RNA U3
- 6S / SsrS RNA
- DsrA RNA
- U4 spliceosomal RNA
- Small nucleolar RNA SNORD14
- Eukaryotic type signal recognition particle RNA
- CsrB/RsmB RNA family
- Y RNA
- U5 spliceosomal RNA
- Spot 42 RNA
- GcvB RNA
- tmRNA
- Vertebrate telomerase RNA
- Ciliate telomerase RNA
- U6 spliceosomal RNA
- let-7 microRNA precursor
- Group I catalytic intron
- Group II catalytic intron
- RNase MRP
- Selenocysteine insertion sequence
- Histone 3' UTR stem-loop
- MicF RNA
- RprA RNA
- OxyS RNA
- HIV Rev response element
- Iron response element
- PrfA thermoregulator UTR
- DicF RNA
- RNase E 5' UTR element
- Enteroviral 3' UTR element
- CopA-like RNA
- R1162-like plasmid antisense RNA
- Bacteriophage pRNA
- Small nucleolar RNA SNORA73
- Small nucleolar RNA R30/Z108
- mir-2 microRNA precursor
- Enterovirus cis-acting replication element
- Small nucleolar RNA SNORD36
- FMN riboswitch (RFN element)
- mir-17 microRNA precursor family
- lin-4 microRNA precursor
- mir-7 microRNA precursor
- Small nucleolar RNA SNORD25
- Small nucleolar RNA Z37
- Small nucleolar RNA SNORA71
- RyhB RNA
- HgcF RNA
- TPP riboswitch (THI element)
- HgcE RNA
- Hepatitis C virus internal ribosome entry site
- HgcC family RNA
- SscA RNA
- HgcG RNA
- Small nucleolar RNA snoR9
- U7 small nuclear RNA
- Small nucleolar RNA SNORD15
- Small nucleolar RNA SNORD21
- Small nucleolar RNA SNORD24
- Small nucleolar RNA SNORD29
- Small nucleolar RNA SNORD73
- Small nucleolar RNA SNORA75
- mir-156 microRNA precursor
- mir-29 microRNA precursor
- mir-166 microRNA precursor
- mir-181 microRNA precursor
- SraB RNA
- SraD RNA
- SraE/RygA/RygB family RNA
- yybP-ykoY leader
- SraH RNA
- SraG RNA
- SraJ RNA
- CsrC RNA family
- Small nucleolar RNA SNORD28
- Small nucleolar RNA SNORD27
- Small nucleolar RNA SNORD26
- Small nucleolar RNA SNORD30
- Small nucleolar RNA SNORD31
- Small nucleolar RNA SNORA74
- Small nucleolar RNA SNORA62
- Small nucleolar RNA SNORA63
- Small nucleolar RNA SNORD18
- Hepatitis delta virus ribozyme
- Pyrococcus C/D box small nucleolar RNA
- U8 small nucleolar RNA
- Plant small nucleolar RNA R71
- Snake H/ACA box small nucleolar RNA
- Small nucleolar RNA SNORD22
- 7SK RNA
- SraC/RyeA RNA
- VA RNA
- mir-1 microRNA precursor family
- mir-10 microRNA precursor family
- Small nucleolar RNA SNORD115
- RNAI
- FinP
- Small nucleolar RNA SNORD116
- Vimentin 3' UTR protein-binding region
- RybB RNA
- RyeB RNA
- RyeE RNA
- QUAD RNA
- Ribosomal S15 leader
- IS061 RNA
- C0465 RNA
- C0719 RNA
- rydB RNA
- C0299 RNA
- C0343 RNA
- MicC RNA
- GadY
- IS102 RNA
- IS128 RNA
- ryfA RNA
- t44 RNA
- tke1 RNA
- mir-103/107 microRNA precursor
- mir-192/215 microRNA precursor
- mir-30 microRNA precursor
- Small nucleolar RNA R24
- Small nucleolar RNA Z195/SNORD33 family
- Small nucleolar RNA Z196/R39/R59 family
- Small nucleolar RNA Z223
- Small nucleolar RNA SNORD81
- Small nucleolar RNA SNORD83
- Small nucleolar RNA SNORD16
- Small nucleolar RNA SNORA72
- Alpha operon ribosome binding site
- Small nucleolar RNA Z118/Z121/Z120
- mir-6 microRNA precursor
- mir-199 microRNA precursor
- Small nucleolar RNA Z105
- Small nucleolar RNA SNORD34
- Small nucleolar RNA Z103
- Small nucleolar RNA SNORD42
- Small nucleolar RNA SNORD58
- Small nucleolar RNA SNORD79
- Small nucleolar RNA SNORD62
- Small nucleolar RNA SNORD63
- Small nucleolar RNA SNORA66
- Small nucleolar RNA SNORA70
- Small nucleolar RNA SNORD39
- Small nucleolar RNA SNORD82
- Small nucleolar RNA Z168/Z174
- Small nucleolar RNA Z159/U59
- Nanos 3' UTR translation control element
- SAM riboswitch (S box leader)
- Hammerhead ribozyme (type I)
- Coronavirus 3' stem-loop II-like motif (s2m)
- Coronavirus 3' UTR pseudoknot
- PrrB/RsmZ RNA family
- Purine riboswitch
- Lysine riboswitch
- Bacterial signal recognition particle RNA
- Retron msr RNA
- Tombusvirus 5' UTR
- ctgf/hcs24 CAESAR
- Hairpin ribozyme
- Cobalamin riboswitch
- Retroviral Psi packaging element
- Tombusvirus 3' UTR region IV
- Small subunit ribosomal RNA, 5' domain
- mir-24 microRNA precursor family
- GAIT element
- Renin stability regulatory element (REN-SRE)
- C/D box small nucleolar RNA SNORD113/SNORD114 family
- Coronavirus packaging signal
- G-CSF factor stem-loop destabilising element (SLDE)
- Potato virus X cis-acting regulatory element
- Flavivirus 3' UTR cis-acting replication element (CRE)
- Small nucleolar RNA SNORD101
- Small nucleolar RNA SNORD102
- Small nucleolar RNA SNORD103
- Small nucleolar RNA SNORD95
- U98 small nucleolar RNA
- Small nucleolar RNA SNORA57
- Bovine leukaemia virus RNA packaging signal
- Citrus tristeza virus replication signal
- Rubella virus 3' cis-acting element
- RsmY RNA family
- Alfalfa mosaic virus RNA 1 5' UTR stem-loop
- rbcL 5' UTR RNA stabilising element
- SL1 RNA
- SL2 RNA
- Small nucleolar RNA Z199
- Small nucleolar RNA Z278
- Small nucleolar RNA R66
- Small nucleolar RNA R160
- Small nucleolar RNA R12
- Small nucleolar RNA R41
- Small nucleolar RNA SNORD54
- K10 transport/localisation element (TLS)
- Small nucleolar RNA R72
- Pestivirus internal ribosome entry site (IRES)
- Aphthovirus internal ribosome entry site (IRES)
- Small nucleolar RNA SNORD35
- Small nucleolar RNA SNORD38
- Small nucleolar RNA R38
- Retrovirus direct repeat 1 (dr1)
- Tombus virus defective interfering (DI) RNA region 3
- c-myc internal ribosome entry site (IRES)
- Small nucleolar RNA SNORD20
- Small nucleolar RNA SNORD46
- Small nucleolar RNA SNORD32
- Human rhinovirus internal cis-acting regulatory element (CRE)
- Small nucleolar RNA SNORD43
- Bag-1 internal ribosome entry site (IRES)
- bip internal ribosome entry site (IRES)
- FGF-2 internal ribosome entry site (IRES)
- Tobamovirus internal ribosome entry site (IRES)
- n-myc internal ribosome entry site (IRES)
- FIE3 (ftz instability element 3') element
- Hepatitis A virus internal ribosome entry site (IRES)
- Picornavirus internal ribosome entry site (IRES)
- T-box leader
- Small Cajal body specific RNA 13
- Spi-1 (PU.1) 5' UTR regulatory element
- Tymovirus/Pomovirus tRNA-like 3' UTR element
- glmS glucosamine-6-phosphate activated ribozyme
- Plasmid RNAIII
- ctRNA
- mir-9/mir-79 microRNA precursor family
- ctRNA
- mir-124 microRNA precursor family
- RNA-OUT
- mir-8/mir-141/mir-200 microRNA precursor family
- ctRNA
- traJ 5' UTR
- mir-26 microRNA precursor family
- mir-19 microRNA precursor family
- mir-135 microRNA precursor family
- mir-160 microRNA precursor family
- mir-148/mir-152 microRNA precursor family
- mir-46/mir-47/mir-281 microRNA precursor family
- Trans-activation response element (TAR)
- mir-219 microRNA precursor family
- Alfalfa mosaic virus coat protein binding (CPB) RNA
- mir-101 microRNA precursor family
- mir-16 microRNA precursor family
- mir-218 microRNA precursor family
- mir-196 microRNA precursor family
- mir-194 microRNA precursor family
- mir-130 microRNA precursor family
- Interferon gamma 5' UTR regulatory element
- Hepatitis C virus (HCV) cis-acting replication element (CRE)
- L-myc internal ribosome entry site (IRES)
- sar RNA
- Small nucleolar RNA SNORA68
- Small nucleolar RNA SNORA64/SNORA10 family
- Small nucleolar RNA SNORA69
- Small nucleolar RNA Z17
- Small nucleolar RNA R64/Z200 family
- Small nucleolar RNA snoZ7/snoR77
- Small nucleolar RNA SNORD61
- Small nucleolar RNA SNORD60
- Small nucleolar RNA SNORA67
- Small nucleolar RNA SNORD59
- Small nucleolar RNA SNORD57
- Small nucleolar RNA SNORD56
- Small nucleolar RNA SNORD52
- Small nucleolar RNA SNORD49
- Small nucleolar RNA SNORD50
- Small nucleolar RNA SNORD45
- Small nucleolar RNA SNORD51
- Small nucleolar RNA SNORD47
- Small nucleolar RNA SNORD48
- small Cajal body-specific RNA 18
- Z18 small nucleolar RNA
- Z6 small nucleolar RNA
- Small Cajal body specific RNA 8
- Small nucleolar RNA SNORD44
- Z30 small nucleolar RNA
- Z12 small nucleolar RNA
- Bamboo mosaic potexvirus (BaMV) cis-regulatory element
- Small nucleolar RNA snoR639/H1
- Small nucleolar RNA TBR5
- Small nucleolar RNA snoM1
- Small nucleolar RNA TBR17
- Small nucleolar RNA TBR7
- Small nucleolar RNA R16
- Small nucleolar RNA Z221
- Small nucleolar RNA Z256
- Small nucleolar RNA SNORA65
- Small nucleolar RNA snoR86
- Small nucleolar RNA Z279
- Small nucleolar RNA Z248
- Small nucleolar RNA Z178
- Small nucleolar RNA snoR98
- Small nucleolar RNA snR60/Z15/Z230/Z193/J17
- Small nucleolar RNA Z165
- Small nucleolar RNA Z188
- Small nucleolar RNA Z206
- Small nucleolar RNA Z173
- Small nucleolar RNA Z182
- Small nucleolar RNA J33
- Small nucleolar RNA R43
- Small nucleolar RNA Z163/Z177 family
- Small nucleolar RNA Z175
- Small nucleolar RNA MBI-1
- Small nucleolar RNA Z185
- Small nucleolar RNA Z247
- Small nucleolar RNA MBI-161
- Small nucleolar RNA R79
- Small nucleolar RNA MBII-202
- Small nucleolar RNA SNORD53
- Small nucleolar RNA Z155
- Small nucleolar RNA Z194
- Small nucleolar RNA Z161/Z228
- Small nucleolar RNA Z162
- Small nucleolar RNA Z43
- Small nucleolar RNA Z169
- Small nucleolar RNA Z266
- Small nucleolar RNA Z157/R69/R10
- Small nucleolar RNA MBI-28
- Small nucleolar RNA Z13/snr52
- Small nucleolar RNA J26
- Small nucleolar RNA Z112
- Small nucleolar RNA snR53
- Small nucleolar RNA snoR60
- Small nucleolar RNA snoMBI-87
- Small nucleolar RNA Z39
- Small nucleolar RNA Z40
- Small nucleolar RNA Z122
- Small nucleolar RNA Z267
- Small nucleolar RNA snoR1
- Small nucleolar RNA Z50
- Small nucleolar RNA snoR9
- Small nucleolar RNA R11/Z151
- Small nucleolar RNA Z152/R70/R12/
- Small nucleolar RNA R20
- Small nucleolar RNA R21
- Small nucleolar RNA snoR31/Z110/Z27
- Small nucleolar RNA snoR28
- Small nucleolar RNA R32/R81/Z41
- Small nucleolar RNA R44/J54/Z268 family
- Small nucleolar RNA Z101
- Small nucleolar RNA Z102/R77
- Small nucleolar RNA Z107/R87
- Small nucleolar RNA Z119
- Pospiviroid RY motif stem loop
- mir-BART1 microRNA precursor family
- mir-BART2 microRNA precursor family
- mir-BHRF1-1 microRNA precursor family
- mir-BHRF1-2 microRNA precursor family
- mir-BHRF1-3 microRNA precursor family
- sroB RNA
- sroC RNA
- sroD RNA
- sroE RNA
- sroH RNA
- Archaeal RNase P
- Gammaretrovirus core encapsidation signal
- HIV primer binding site (PBS)
- HIV gag stem loop 3 (GSL3)
- Small nucleolar RNA U6-53/MBII-28
- Qrr RNA
- ydaO/yuaA leader
- ykoK leader
- Antizyme RNA frameshifting stimulation element
- DnaX ribosomal frameshifting element
- Insertion sequence IS1222 ribosomal frameshifting element
- Poxvirus AX element late mRNA cis-regulatory element
- Infectious bronchitis virus D-RNA
- Enterovirus 5' cloverleaf cis-acting replication element
- FGF-1 internal ribosome entry site (IRES)
- Qa RNA
- Bamboo mosaic virus satellite RNA cis-regulatory element
- UPSK RNA
- RtT RNA
- Small nucleolar RNA SNORA5
- Small nucleolar RNA SNORA8
- Small nucleolar RNA SNORA4
- Small nucleolar RNA SNORA13
- Small nucleolar RNA SNORA14
- Small nucleolar RNA SNORA15
- Small nucleolar RNA SNORA24
- Small nucleolar RNA SNORA28
- Small nucleolar RNA SNORA20
- Small nucleolar RNA SNORA25
- Small nucleolar RNA SNORA41
- Small nucleolar RNA SNORA46
- Small nucleolar RNA SNORA44
- Small nucleolar RNA SNORA42
- Small nucleolar RNA SNORA50
- Small nucleolar RNA SNORA1
- Small nucleolar RNA SNORA7
- Small nucleolar RNA SNORA2
- Small nucleolar RNA SNORA9
- Small nucleolar RNA SNORA21
- Small nucleolar RNA SNORA19
- Small nucleolar RNA SNORA22
- Small nucleolar RNA SNORA30
- Small nucleolar RNA SNORA43
- Small nucleolar RNA SNORA56
- Small nucleolar RNA SNORA58
- Small nucleolar RNA SNORA52
- Small nucleolar RNA SNORA61
- Small nucleolar RNA SNORA32
- Small Cajal body specific RNA 24
- Small Cajal body specific RNA 4
- Small Cajal body specific RNA 16
- Small nucleolar RNA SNORA18
- Small Cajal body specific RNA 15
- Small Cajal body specific RNA 23
- Small nucleolar RNA SNORA38
- Small nucleolar RNA SNORA29
- Small nucleolar RNA SNORA54
- Small nucleolar RNA SNORA55
- Small nucleolar RNA SNORA51
- Hsp90 cis-regulatory element
- Luteovirus cap-independent translation element (BTE)
- Repression of heat shock gene expression (ROSE) element
- UnaL2 LINE 3' element
- Hairy RNA localisation element (HLE)
- Small nucleolar RNA SNORA33
- Small nucleolar RNA SNORD87
- Small nucleolar RNA SNORD37
- Small nucleolar RNA Z242
- ykkC-yxkD leader
- Small nucleolar RNA SNORA27
- PrrF RNA
- mir-399 microRNA precursor family
- mir-133 microRNA precursor family
- Voltage-gated potassium-channel Kv1.4 IRES
- Epstein-Barr virus nuclear antigen (EBNA) IRES
- HIF-1 alpha IRES
- Small nucleolar RNA R105/R108
- mir-395 microRNA precursor family
- mir-172 microRNA precursor family
- Cardiovirus cis-acting replication element (CRE)
- p27 cis-regulatory element
- mir-15 microRNA precursor family
- mir-34 microRNA precursor family
- Mnt IRES
- Cripavirus internal ribosome entry site (IRES)
- Mason-Pfizer monkey virus packaging signal
- U1A polyadenylation inhibition element (PIE)
- Vascular endothelial growth factor (VEGF) IRES A
- APC internal ribosome entry site (IRES)
- Apolipoprotein B (apoB) 5' UTR cis-regulatory element
- mir-92 microRNA precursor family
- Japanese encephalitis virus (JEV) hairpin structure
- Rous sarcoma virus (RSV) primer binding site (PBS)
- Hepatitis C virus stem-loop VII
- Hepatitis C stem-loop IV
- Togavirus 5' plus strand cis-regulatory element
- Small nucleolar RNA snR48
- Small nucleolar RNA snR55/Z10
- Small nucleolar RNA snR54
- Small nucleolar RNA snR57
- Small nucleolar RNA snR69
- Small nucleolar RNA snR61/Z1/Z11
- Small nucleolar RNA snR66
- Small Cajal body specific RNA 6
- Small nucleolar RNA snR71
- HIV Ribosomal frameshift signal
- Hepatitis C virus 3'X element
- Small nucleolar RNA F1/F2/snoR5a
- Insulin-like growth factor II IRES
- Connexin-32 internal ribosome entry site (IRES)
- Potassium channel RNA editing signal
- mir-129 microRNA precursor family
- Connexin-43 internal ribosome entry site (IRES)
- Yeast U1 spliceosomal RNA
- ctRNA
- S-element
- Simian virus 40 late polyadenylation signal (SVLPA)
- small Cajal body-specific RNA 17
- Small nucleolar RNA U2-30
- Small nucleolar RNA U2-19
- Heat shock protein 70 (Hsp70) internal ribosome entry site (IRES)
- Coronavirus SL-III cis-acting replication element (CRE)
- Equine arteritis virus leader TRS hairpin (LTH)
- Human parechovirus 1 (HPeV1) cis regulatory element (CRE)
- Turnip crinkle virus (TCV) repressor of minus strand synthesis H5
- Rotavirus cis-acting replication element (CRE)
- Turnip crinkle virus (TCV) core promoter hairpin (Pr)
- RNAIII
- Glycine riboswitch
- RydC RNA
- Threonine operon leader
- Coronavirus frameshifting stimulation element
- Small nucleolar RNA snR64
- Tombusvirus internal replication element (IRE)
- Kaposi's sarcoma-associated herpesvirus internal ribosome entry site (IRES)
- Leucine operon leader
- Tryptophan operon leader
- Histidine operon leader
- PyrR binding site
- ylbH leader
- serC leader
- speF leader
- suhB
- ybhL leader
- SAM riboswitch (alpha-proteobacteria)
- PreQ1 riboswitch
- Prion pseudoknot
- R2 RNA element
- Flavivirus DB element
- Small nucleolar RNA Me28S-U3344
- Small nucleolar RNA Me28S-Gm3255
- Small nucleolar RNA Me28S-Gm1083
- Small nucleolar RNA Me28S-Am2589
- Small nucleolar RNA Me28S-Cm2645
- Small nucleolar RNA Me28S-Gm3113
- Small nucleolar RNA Me18S-Um1356
- Small nucleolar RNA Me18S-Gm1358
- SgrS RNA
- Small nucleolar RNA Me28S-Am982
- Small nucleolar RNA Me28S-Cm3227
- Small nucleolar RNA Me28S-Am2634
- Small nucleolar RNA CD11
- Small nucleolar RNA Me28S-Cm788
- Small nucleolar RNA psi18S-1854
- Small nucleolar RNA psi28S-2876
- Small nucleolar RNA psi28S-1192
- Small nucleolar RNA psi18S-1377
- Small nucleolar RNA psi28S-3327
- Small nucleolar RNA psi18S-841/snoR66
- Small nucleolar RNA psi28S-3316
- TrkB IRES
- U11 spliceosomal RNA
- c-sis internal ribosome entry site (IRES)
- Hepatitis E virus cis-reactive element
- Bicoid 3'-UTR regulatory element
- rncO
- Small Cajal body specific RNA 1
- Small nucleolar RNA SNORA48
- Ribosomal protein L13 leader
- Ribosomal protein L19 leader
- Ribosomal protein L10 leader
- Ribosomal protein L20 leader
- Ribosomal protein L21 leader
- Small nucleolar RNA SNORA17
- Small nucleolar RNA SNORA40
- Small nucleolar RNA SNORA49
- Small nucleolar RNA SNORA53
- Small Cajal body specific RNA 11
- Small Cajal body specific RNA 25
- Small nucleolar RNA SNORA35
- Small nucleolar RNA SNORD17
- Small nucleolar RNA SNORA26
- Small nucleolar RNA SNORD19
- Small Nucleolar RNA SNORD64
- Small nucleolar RNA SNORD65
- Small nucleolar RNA SNORD66
- Small nucleolar RNA SNORD67
- Small nucleolar RNA SNORD69
- Small nucleolar RNA SNORD70
- Small nucleolar RNA SNORD71
- Small nucleolar RNA SNORD72
- Small nucleolar RNA SNORD89
- Small nucleolar RNA SNORD90
- Small nucleolar RNA 296A/B
- Small nucleolar SNORD12/SNORD106
- Small Cajal body specific RNA 14
- Small nucleolar RNA SNORD105
- Small nucleolar RNA SNORA12
- Small nucleolar RNA SNORD41
- Small nucleolar RNA SNORD77
- Small nucleolar RNA SNORD78
- Small nucleolar RNA U83B
- Small nucleolar RNA SNORD86