The Bacteroides thetaiotaomicron genome contains over 100 intergenic small RNAs [1].
References
edit- ^ Ryan, Daniel; Jenniches, Laura; Reichardt, Sarah; Barquist, Lars; Westermann, Alexander J. (2020-07-16). "A high-resolution transcriptome map identifies small RNA regulation of metabolism in the gut microbe Bacteroides thetaiotaomicron". Nature Communications. 11 (1): 3557. doi:10.1038/s41467-020-17348-5. ISSN 2041-1723. PMC 7366714. PMID 32678091.
Further reading
edit- Carter RJ, Dubchak I, Holbrook SR (October 2001). "A computational approach to identify genes for functional RNAs in genomic sequences". Nucleic Acids Research. 29 (19): 3928–3938. doi:10.1093/nar/29.19.3928. PMC 60242. PMID 11574674.
- Chen S, Lesnik EA, Hall TA, Sampath R, Griffey RH, Ecker DJ, Blyn LB (2002). "A bioinformatics based approach to discover small RNA genes in the Escherichia coli genome". Bio Systems. 65 (2–3): 157–177. doi:10.1016/S0303-2647(02)00013-8. PMID 12069726.
- Tjaden B, Saxena RM, Stolyar S, Haynor DR, Kolker E, Rosenow C (September 2002). "Transcriptome analysis of Escherichia coli using high-density oligonucleotide probe arrays". Nucleic Acids Research. 30 (17): 3732–3738. doi:10.1093/nar/gkf505. PMC 137427. PMID 12202758.
- Vogel J, Sharma CM (December 2005). "How to find small non-coding RNAs in bacteria". Biological Chemistry. 386 (12): 1219–1238. doi:10.1515/BC.2005.140. PMID 16336117.
- Raghavan R, Groisman EA, Ochman H (September 2011). "Genome-wide detection of novel regulatory RNAs in E. coli". Genome Research. 21 (9): 1487–1497. doi:10.1101/gr.119370.110. PMC 3166833. PMID 21665928.