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Phycobiliproteins are water-soluble proteins present in cyanobacteria and certain algae (rhodophytes, cryptomonads, glaucocystophytes) which capture light energy, which is then passed on to chlorophylls during photosynthesis. Phycobiliproteins are formed of a complex between proteins and covalently bound phycobilins that act as chromophores (the light-capturing part). They are most important constituents of the phycobilisomes.
|Phycobiliprotein||MW (kDa)||Ex (nm) / Em (nm)||Quantum yield||Molar Extinction Coefficient (M−1cm−1)||Comment||Image|
|R-Phycoerythrin (R-PE)||240||498.546.566 nm / 576 nm||0,84||1.53 106||Can be excited by Kr/Ar laser
Applications for R-Phycoerythrin
Many applications and instruments were developed specifically for R-phycoerythrin. It is commonly used in immunoassays such as FACS, flow cytometry, multimer/tetramer applications.
R-phycoerythrin is also produced by certain red algae. The protein is made up of at least three different subunits and varies according to the species of algae that produces it. The subunit structure of the most common R-PE is (αβ)6γ. The α subunit has two phycoerythrobilins (PEB), the β subunit has 2 or 3 PEBs and one phycourobilin (PUB), while the different gamma subunits are reported to have 3 PEB and 2 PUB (γ1) or 1 or 2 PEB and 1 PUB (γ2).
|B-Phycoerythrin (B-PE)||240||546.566 nm / 576 nm||0,98||(545 nm) 2.4 106
(563 nm) 2.33 106
|Applications for B-Phycoerythrin
Because of its high quantum yield, B-PE is considered the world’s brightest fluorophore. It is compatible with commonly available lasers and gives exceptional results in flow cytometry, Luminex® and immunofluorescent staining. B-PE is also less “sticky” than common synthetic fluorophores and therefore gives less background interference.
B-phycoerythrin (B-PE) is produced by certain red algae such as Rhodella sp. The specific spectral characteristics are a result of the composition of its subunits. B-PE is composed of at least three subunits and sometimes more. The chromophore distribution is as follows: α subunit with 2 phycoerythrobilins (PEB), β subunit with 3 PEB, and the γ subunit with 2 PEB and 2 phycourobilins (PUB). The quaternary structure is reported as (αβ)6γ.
|C-Phycocyanin (CPC)||232||620 nm / 642 nm||0,81||1.54 106||Accepts the fluorescence for R-PE; Its red fluorescence can be transmitted to Allophycocyanin|
|Allophycocyanin (APC)||105||651 nm / 662 nm||0,68||7.3 105||Excited by He/Ne laser; double labeling with Sulfo-Rhodamine 101 or any other equivalent fluorochrome.
Applications for Allophycocyanin
Many applications and instruments were developed specifically for allophycocyanin. It is commonly used in immunoassays such as flow cytometry and high-throughput screening. It is also a common acceptor dye for FRET assays.
Allophycocyanin can be isolated from various species of red or blue-green algae, each producing slightly different forms of the molecule. It is composed of two different subunits (α and β) in which each subunit has one phycocyanobilin (PCB) chromophore. The subunit structure for APC has been determined as (αβ)3.
|↑ = FluoProbes PhycoBiliProteins data|
Characteristics and applications in biotechnologyEdit
Phycobiliproteins elicit great fluorescent properties compared to small organic fluorophores, especially when high sensitivity or multicolor detection is required :
- Broad and high absorption of light suits many light sources
- Very intense emission of light: 10-20 times brighter than small organic fluorophores
- Relative large Stokes shift gives low background, and allows multicolor detections.
- Excitation and emission spectra do not overlap compared to conventional organic dyes.
- Can be used in tandem (simultaneous use by FRET) with conventional chromophores (i.e. PE and FITC, or APC and SR101 with the same light source).
- Fluorescence retention period is longer.
- Very high water solubility
As a result, phycobiliproteins allow very high detection sensitivity, and can be used in various fluorescence based techniques fluorimetric microplate assays, Flow Cytometry, FISH and multicolor detection.
- Contreras-Martel, C.; Legrand, P.; Piras, C.; Vernede, X.; et al. (2000-05-09). "Crystal structure of R-phycoerythrin at 2.2 angstroms". RCSB Protein Data Bank (PDB). doi:10.2210/pdb1eyx/pdb. PDB ID: 1EYX. Retrieved 11 October 2012.
- Contreras-Martel C, Martinez-Oyanedel J, Bunster M, Legrand P, Piras C, Vernede X, Fontecilla-Camps JC (January 2001). "Crystallization and 2.2 A resolution structure of R-phycoerythrin from Gracilaria chilensis: a case of perfect hemihedral twinning". Acta Crystallographica D. 57 (Pt 1): 52–60. doi:10.1107/S0907444900015274. PMID 11134927. PDB ID: 1EYX.
- Image created with RasTop (Molecular Visualization Software).
- Camara-Artigas, A. (2011-12-16). "Crystal Structure of the B-phycoerythrin from the red algae Porphyridium cruentum at pH8". RCSB Protein Data Bank (PDB). doi:10.2210/pdb3v57/pdb. PDB ID: 3V57. Retrieved 12 October 2012.
- Camara-Artigas A, Bacarizo J, Andujar-Sanchez M, Ortiz-Salmeron E, Mesa-Valle C, Cuadri C, Martin-Garcia JM, Martinez-Rodriguez S, Mazzuca-Sobczuk T, Ibañez MJ, Allen JP (October 2012). "pH-dependent structural conformations of B-phycoerythrin from Porphyridium cruentum". The FEBS Journal. 279 (19): 3680–3691. doi:10.1111/j.1742-4658.2012.08730.x. PMID 22863205. PDB ID: 3V57.
- MicroPlate Detection comparison between SureLight®P-3L, other fluorophores and enzymatic detection Columbia Biosciences, 2010
- Cyanobacterial stabilized phycobilisomes as fluorochromes for extracellular antigen detection by flow cytometry Telford - J. Immun. Methods, 2001