Niles Canyon is a canyon in the San Francisco Bay Area formed by Alameda Creek, known for its heritage railroad and silent movie history. The canyon is largely in an unincorporated area of Alameda County, while the western portion of the canyon lies within the city limits of Fremont and Union City. The stretch of State Route 84 known as Niles Canyon Road traverses the length of the canyon from the Niles district of Fremont to the unincorporated town of Sunol. Two railroads also follow the same route down the canyon from Sunol to Niles: the old Southern Pacific track along the north side, now the Niles Canyon Railway, and the newer Union Pacific (formerly the Western Pacific) track a little to the south. At the west end of the canyon are the ruins of the Vallejo Flour Mill, which dates to 1853.
Alameda Creek in Niles Canyon
|Native name||Arroyo de la Alameda, Cañada Molina Vallejo|
|⁃ location||at Sunol, California|
|at Niles, California|
|82 ft (25 m)|
The route of El Camino Viejo à Los Angeles (Old Road to Los Angeles), the oldest north-south trail in the interior of Alta California, ran through Niles Canyon. In addition, the canyon, also known as Alameda Cañon, was located in three different Mexican land grants - Rancho Arroyo de la Alameda, Rancho Ex-Mission San José, and Rancho Valle de San Jose.
It was later named Cañada Molina Vallejo for the two story adobe grist mill built in the early 1840's on the Rancho Arroyo de la Alameda near the mouth of the canyon by its owner José de Jesús Vallejo, elder brother, of Mariano Guadalupe Vallejo. The locality became known as Vallejo's Mill and later, after 1856, as Vallejo's Mills when Vallejo built a second wooden three story mill next to the original adobe mill in 1856. The area later became the town of Niles, named after the Niles Station, which was built when the railroad was built through the canyon in 1869. The station was named after Central Pacific Railroad attorney Addison C. Niles, later a California Supreme Court judge. The Thompson & West map  shows that the area was still known as Niles or Vallejo Mills in 1878 with the Contract & Finance Co. still in ownership of the later town of Niles.
The railroad through Alameda Cañon to Pleasanton was completed August 15, 1869 and to Laddsville on August 18, 1869. The first through train from Stockton to Alameda (the first terminus of the Transcontinental Railroad ) ran through Alameda Cañon on September 6, 1869. 
Essanay Film Manufacturing Company, an early motion picture company, had a studio and back lot located in Niles from 1912–1916 at the canyon's western mouth. The canyon was featured in many early films, some by Broncho Billy and it was here that Charlie Chaplin filmed one of his most iconic movies, The Tramp. The Niles Essanay Silent Film Museum has exhibits, screenings, and events remembering its heritage.
The Union Pacific Railroad (formerly Western Pacific Railroad) has an active mainline on the south side of the canyon. The Altamont Corridor Express runs along this line on weekdays. The former Southern Pacific route from Oakland to Tracy via Niles Canyon is now abandoned, except for the portion from Sunol to Niles Station operated by the heritage railway known as the Niles Canyon Railway. This line was the original westernmost section of the First Transcontinental Railroad from Sacramento to San Francisco Bay (by way of Stockton and the Altamont Pass). It was completed in September 1869 by the Western Pacific Railroad (1862-1870), but lost its transcontinental traffic in 1879 to a shorter route through Benicia. The Southern Pacific tracks in Niles Canyon are on the north side of the canyon. Southern Pacific, being the first railroad in the canyon, chose the best route. Therefore, when the Western Pacific tracks were laid through the canyon in 1905-1908, they were left with a more difficult challenge. This forced Western Pacific engineers to bore two tunnels and construct a steel bridge to lay their tracks. When driving the longer of the two tunnels, two gangs of excavators worked on it, one driving the tunnel from the east end and the other from the west end. The excavators drove about 100 feet per month.
- U.S. Geological Survey Geographic Names Information System: Niles Canyon
- Earle E. Williams, Tales of Old San Joaquin City, San Joaquin Historian, Published Quarterly, By San Joaquin County Historical Society, VOL. IX, No. 2, APRIL - JUNE 1973. p.13, note 8. "El Camino Viejo ran along the eastern edge of the Coast Range hills in the San Joaquin Valley northward to the mouth of Corral Hollow. From this point it ran generally east-west through the hills and then down into the Livermore Valley and on to Mission San Jose. From there it turned northward, terminating at what is now the Oakland area. ... see Earle E. Williarms, Old Spanish Trails of Ihe San Joaquin Valley, (Tracy, California), 1965."
- [http://nileshomesweethome.blogspot.com/2010/05/niles-vallejos-mill-take-two.html Niles - Vallejo's Mill (Take Two), Monday, May 3, 2010] from Niles - Home, Sweet Home! at , accessed January 24, 2018.
- "Wash. Corners, Haywards Park, Niles, Pleasanton. - David Rumsey Historical Map Collection". www.davidrumsey.com. Retrieved 2019-08-10.
- "Marysville Daily Appeal 15 August 1869 — California Digital Newspaper Collection". cdnc.ucr.edu. Retrieved 2019-08-16.
- "Marysville Daily Appeal 19 August 1869 — California Digital Newspaper Collection". cdnc.ucr.edu. Retrieved 2019-08-16.
- "Calisphere: First terminus of the Transcontinental Railroad at foot of Pacific Ave., Alameda [picture]". Calisphere. Retrieved 2019-08-16.
- "Daily Alta California 7 September 1869 — California Digital Newspaper Collection". cdnc.ucr.edu. Retrieved 2019-08-16.
- Nale, Bill. "Livermore History - Railroads 1". eLivermore.com. Livermore, California. Retrieved 2016-03-12.
- Bender, Henry E. Jr. "Southern Pacific Sunol Depot Returns". Retrieved 2016-03-14.
Southern Pacific’s line from Niles through Niles Canyon, Livermore, and Altamont Pass to Tracy was completed by the first Western Pacific Railroad (which was a Central Pacific subsidiary by then) in September 1869. It was the first railroad connecting the San Francisco Bay Area to Sacramento and the Transcontinental RailroadFrom The Ferroequinologist.
- "Will Tunnel Niles Foothills: Western Pacific Construction Work to be Started Shortly". Santa Cruz Sentinel. 1905-10-25. p. 9.
An important piece of construction work that is to be started within a few days on the Western Pacific's line, is a tunnel that is to penetrate the Niles foothills east of San Jose, and afford the road an easy grade through the high ground in the eastern end of Alameda county. The line will follow the course of the Niles canyon for some distance and then enter a tunnel of considerable length. It is estimated that the building of the tunnel will require at least a year and in order that the line may be brought to completion with as little delay as possible, no time is to be lost in starting work on the Niles tunnel. It was announced Saturday that the necessary men and machinery will be on the ground within a few days, and that construction work will be started immediately.
- "Tunnel Caves in at Niles Canyon". Los Angeles Herald. 33 (239). Associated Press. 1906-05-27.
May 26 -- Ten men were imprisoned for several hours this afternoon in the Western Pacific railway tunnel in Niles canyon, which caved in while the gang was at work. There was just warning enough of the accident to enable the men to escape the worst of the sudden fall of earth and rock.
- Rattenne, Ken. "The 'Other' Canyon". Retrieved 2016-03-14. Excerpted from Rattenne, Ken (February 1990). The Feather River Route, Volume I. Interurban Press. ISBN 978-0870460913.
- " "Tunnel Soon to Be Completed". Brotherhood of Locomotive Firemen and Enginemen's Magazine. Indianapolis: Brotherhood of Locomotive Firemen and Enginemen. 44 (3): 333. March 1908.
If the present progress of driving the Niles Canyon tunnel of the Western Pacific Railroad is continued, it is believed that trains will be running through the mountains by the first of July, 1908.