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The Flavobacterium-1 RNA motif is a conserved RNA structure discovered by bioinformatics.[1] Flavobacterium-1 motif RNAs are found in metagenomic samples from the environment, and only one example of this motif is present in a classified organism. This organism is Flavobacterium sp. SCGC AAA160-P02, which belongs to the bacterial phylum Bacteroidota.
| Flavobacterium-1 | |
|---|---|
 Consensus secondary structure and sequence conservation of Flavobacterium-1 RNA | |
| Identifiers | |
| Symbol | Flavobacterium-1 |
| Rfam | RF02976 |
| Other data | |
| RNA type | Gene; sRNA |
| SO | SO:0001263 |
| PDB structures | PDBe |
Flavobacterium-1 RNAs likely function in trans as small RNAs, and do not exhibit a clear association with any type of protein-coding gene. Most genes near Flavobacterium-1 RNAs fail to match known conserved protein domains, suggesting that they participate in a poorly studied biological process.
References
edit- ^ Weinberg Z, Lünse CE, Corbino KA, Ames TD, Nelson JW, Roth A, Perkins KR, Sherlock ME, Breaker RR (October 2017). "Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions". Nucleic Acids Res. 45 (18): 10811–10823. doi:10.1093/nar/gkx699. PMC 5737381. PMID 28977401.