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The Cupriavidus-1 RNA motif is a conserved RNA structure that was discovered by bioinformatics.[1] Cupriavidus-1 motifs are found in Betaproteobacteria, within Cupriavidus.
| Cupriavidus-1 | |
|---|---|
 Consensus secondary structure and sequence conservation of Cupriavidus-1 RNA | |
| Identifiers | |
| Symbol | Cupriavidus-1 |
| Rfam | RF02949 |
| Other data | |
| RNA type | Gene; sRNA |
| SO | SO:0001263 |
| PDB structures | PDBe |
It is ambiguous whether Cupriavidus-1 RNAs function as cis-regulatory elements or whether they operate in trans. In some cases they are located between genes encode subunits of ATP synthase, but there are too few Cupriavidus-1 RNAs that are known in order to determine whether this association has biological significance.
References
edit- ^ Weinberg Z, Lünse CE, Corbino KA, Ames TD, Nelson JW, Roth A, Perkins KR, Sherlock ME, Breaker RR (October 2017). "Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions". Nucleic Acids Res. 45 (18): 10811–10823. doi:10.1093/nar/gkx699. PMC 5737381. PMID 28977401.