Bioturbation is the reworking of soils and sediments by animals or plants.
Its effects include changing the texture of sediments (diagenesis), bioirrigation, and displacement of microorganisms and non-living particles. Common bioturbators include annelids (ringed worms) such as oligochaetes and Spirobranchus giganteus, bivalves like mussels and clams, gastropods, holothurians, or any other infaunal or epifaunal organisms. Faunal activities, such as burrowing, ingestion and defecation of sediment grains, construction and maintenance of galleries, and infilling of abandoned dwellings, all displace sediment grains and mix the sediment matrix.
The process leads to an increase in sediment-water interface, which facilitates particle exchange between the sediment and water column. In coral reefs sea cucumbers are one of the important bioturbators, capable of reworking approximately 4600 kg(dry weight) of sediment 1000 m² per year.
Bioturbation in aquatic environments is conducted by a host of organisms, most often invertebrates. In estuarine environments, clams, shrimp, and polychaete worms often dominate bioturbation processes and are essential to oxygenation of anoxic sediments due to their ability to enhance aerobic respiration and other processes such as denitrification and sulfate reduction.
In soil science, pedology, geomorphology, and archaeology, bioturbation is the physical rearrangement of the soil profile by soil life. Plants and animals exploit the solum for food and shelter and, in the process, disturb the fabric of the soil and the underlying parent material. Burrowing animals (including insects) and plant root-systems form passageways for air and water movement, changing soil morphology. A passageway constructed by an animal that becomes backfilled with soil is known as a krotovina. Invertebrates that burrow and mound soil tend to produce a biomantle topsoil (soil biomantle), and as such are primary agents of horizonation. Uprooted trees break up bedrock, transport soil downslope, increase the heterogeneity of soil respiration rates, and disrupt soil horizonation.
Charles Darwin initially recognized bioturbation as a pedogenic force, and Nathaniel Shaler developed the concept further. Although science recognized the importance of Darwin's mixing–sorting-biomechanical principles as an important soil-forming process from the last half of the 19th century, they eluded Vasily Dokuchaev, the highly influential founder of modern pedology. Further development of the concept languished as a result. The term "bioturbation" did not exist before 1952, when it was coined[by whom?] to aid in ichnological assessments. "Bioturbation" appeared in the soil and geomorphic literature in the early 1980s, and remains a key term of the pedogenic lexicon. Bioturbation is central to the soil biomantle concept formulated in 1990. The biomantle is the upper part of soil, produced largely by biota, and dominantly by bioturbation. Biomantles tend to be one-layered when formed in homogeneous materials, and two-layered when formed in mixed fine-and-coarse materials. Bioturbation by burrowing animals results in soil landscapes that are both polygenetic (having many causes) and polytemporal (having been created at many times).
Mathematical models are often used to describe sediment biogeochemistry. Commonly, these models take the form of ordinary differential equations or partial differential equations in which bioturbation appears as a diffusive term completed or not with advective terms. A diffusive description is often adopted to avoid quantifying the plethora of mixing modes resulting from faunal activities. The diffusion coefficient describing the intensity of bioturbation is usually determined by fitting mathematical models to vertical distributions of natural radioactive tracers, radioisotopes resulting from nuclear weapon testing, or introduced particles, such as glass beads tagged with radionuclides or inert fluorescent particles.
Bioturbation's importance for soil processes and geomorphology was ﬁrst realised by Charles Darwin, who devoted his last scientiﬁc book to the subject (The Formation of Vegetable Mould through the Action of Worms, 1881). Modern research has provided further insight into the evolutionary and ecological role of bioturbation. In modern ecological theory, bioturbation is recognised as an archetypal example of 'ecosystem engineering', modifying geochemical gradients, redistributing food resources, viruses, bacteria, resting stages and eggs. From an evolutionary perspective, recent investigations provide evidence that bioturbation had a key role in the evolution of metazoan life at the end of the Precambrian Era.
Patterns of bioturbation may be preserved in lithified rock, and the study of such patterns is called ichnology, or the study of "trace fossils". In some cases bioturbation is so pervasive that it completely obliterates sedimentary structures, such as cross-bedding. It thus affects the disciplines of sedimentology and stratigraphy within geology.
- Mermillod-Blondin, Florian (2011-09-01). "The functional significance of bioturbation and biodeposition on biogeochemical processes at the water–sediment interface in freshwater and marine ecosystems". Journal of the North American Benthological Society. 30 (3): 770–778. ISSN 0887-3593. doi:10.1899/10-121.1.
- Pelegri, Silvia Pedret; Nielsen, Lars Peter; Blackburn, Thomas Henry (1994). "Denitrification in estuarine sediment stimulated by the irrigation activity of the amphipod Corophium volutator". Marine Ecology Progress Series. 105 (3): 285–290. doi:10.2307/24844868.
- Gilbert, Franck; Bonin, Patricia; Stora, Georges (1995-05-01). "Effect of bioturbation on denitrification in a marine sediment from the West Mediterranean littoral". Hydrobiologia. 304 (1): 49–58. ISSN 0018-8158. doi:10.1007/bf02530703.
- Bertics, Victoria J.; Ziebis, Wiebke (2010-11-01). "Bioturbation and the role of microniches for sulfate reduction in coastal marine sediments". Environmental Microbiology. 12 (11): 3022–3034. ISSN 1462-2920. doi:10.1111/j.1462-2920.2010.02279.x.
- Paton, T. R., Humphreys, G. S., and Mitchell, P. B., 1995, Soils: A New Global View: London, UCL Press Limited.
- Shaler, N. S., 1891, The origin and nature of soils, in Powell, J. W., ed., USGS 12th Annual report 1890-1891: Washington, D.C., Government Printing Office, p. 213-45.
- Darwin, C., 1881, The formation of vegetable mould through the action of worms, with observations on their habits: London, John Murray.
- Wilkinson, M. T., and Humphreys, G. S., 2005, Exploring pedogenesis via nuclide-based soil production rates and OSL-based bioturbation rates: Australian Journal of Soil Research, v. 43, p.767-779.
- Johnson, D. L. 1990. Biomantle evolution and the redistribution of Earth materials and artifacts. Soil Science 149, pp. 84 102.
- Richards, P.J. 2009. Aphaenogaster ants as bioturbators: impacts on soil and slope processes. Earth-Science Reviews 96: 92-106.
- Gabet, Reichman, and Seabloom. 2003. The effects of bioturbation on soil processes and hillslope evolution. Annual Review of Earth and Planetary Sciences 31:249-273.
- Schaetzl, R.J., D.L. Johnson, S.F. Burns, and T.W. Small. 1989. Tree uprooting: Review of terminology, process, and environmental implications. Canadian Journal of Forestry Research, v. 19, pp. 1 11.
- Schaetzl, R.J., S.F. Burns, D.L. Johnson, and T.W. Small. 1989. Tree uprooting: Review of impacts on forest ecology. Vegetatio, v. 79, pp. 165 176.
- Schaetzl, R.J., S.F. Burns, T.W. Small, and D.L. Johnson. 1990.Tree uprooting: Review of types and patterns of soil disturbance. Physical Geography, v. 11, pp. 277 291.
- Humphreys, G. S., and Mitchell, P. B., 1983, A preliminary assessment of the role of bioturbation and rainwash on sandstone hillslopes in the Sydney Basin, in Australian and New Zealand Geomorphology Group, p. 66-80.
- Johnson, D.L., D.N. Johnson, and J.L. Horwath. 2002. In praise of the coarse fraction and bioturbation: Gravelly Mima mounds as two-layered biomantles. Geological Society of America Abstracts with Programs, v. 34 (6), pp. 369.
- Meysman, Middelburg, and Heip. 2006. Bioturbation: a fresh look at Darwin's last idea. Trends in Ecology & Evolution, doi:10.1016/j.tree.2006.08.002.