Module talk:Infobox gene

Latest comment: 3 months ago by Jonesey95 in topic Edit request 15 January 2024
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Request to add Expression Atlas links edit

Initial disclaimer: I am the Lead Developer of Expression Atlas and Single Cell Expression Atlas web applications (https://www.ebi.ac.uk/people/person/alfonso-munoz-pomer-fuentes/).

A couple of years ago a proposal to add Expression Atlas to the infobox was briefly discussed. I’d like to bring the topic back, and gauge how much interest there is in the community. I’ve been hacking around the Lua code and I got to add three useful links for a given gene: bulk baseline expression (e.g. mRNA-seq experiments), bulk differential expression (e.g. microarray experiments) and single-cell expression (single cell RNA-seq).

See an example below. Feel free to offer any suggestions. I’m not very knowledgeable in Lua, but I tried to follow the conventions I saw in the module.

File:Infobox gene (sandbox) with Expression Atlas links.pngAlfonso Muñoz-Pomer Fuentes (talk) 16:44, 4 August 2022 (UTC)Reply

Template-protected edit request on 2 March 2023 edit

Error: [778:86] invalid escape sequence near '\:' مهدی بهرامی مطلق (talk) 16:29, 2 March 2023 (UTC)Reply

Not sure where you saw this error, but I believe \: and \; are not required, please check diff — Martin (MSGJ · talk) 21:51, 3 March 2023 (UTC)Reply
That was a massive and very productive edit! I didn't check all the details but it looked good and fixed the reported problem. Johnuniq (talk) 01:10, 4 March 2023 (UTC)Reply
Had my Lua-challenged mind puzzled! Seems that the error is found in the [edit screen]. Click on the red x-box at the bottom of the edit screen to actually see the error. That does not appear in the sandbox's edit screen. P.I. Ellsworth , ed. put'er there 07:42, 4 March 2023 (UTC)Reply
  Done * Pppery * it has begun... 22:14, 4 March 2023 (UTC)Reply

Human UniProt search error edit

I am not sure if this is a problem in Infobox gene or Wikidata, but the rendering of the Human UniProt search link in Mucin-1 is not right. Does anyone have any idea how to fix this? Thanks. Boghog (talk) 06:43, 26 April 2023 (UTC)Reply

  Done The problem was in Wikidata. Only one UniProt ID should be associated with the human protein, not two. Fixed in this edit. Boghog (talk) 06:50, 26 April 2023 (UTC)Reply

Edit request 15 January 2024 edit

Modify Bgee links edit

The Bgee links changed. To avoid redirections, please include "www" in the URLs as shown below. Thank you very much for your help.

Diff:

local bgee_gene_page = "https://bgee.org/gene/"
+
local bgee_gene_page = "https://www.bgee.org/gene/"
bgee_title = "[https://bgee.org/ " .. bgee_title .. "]"
+
bgee_title = "[https://www.bgee.org/ " .. bgee_title .. "]"

Tarsmf (talk) 16:21, 15 January 2024 (UTC)Reply

  Done. Tested at FOXS1. – Jonesey95 (talk) 00:27, 16 January 2024 (UTC)Reply