A locus (plural loci) in genetics is a fixed position on a chromosome, like the position of a gene or a marker (genetic marker) . Each chromosome carries many genes; human's estimated 'haploid' protein coding genes are 19,000-20,000, on the 23 different chromosomes. A variant of the similar DNA sequence located at a given locus is called an allele. The ordered list of loci known for a particular genome is called a gene map. Gene mapping is the process of determining the locus for a particular biological trait.
Diploid and polyploid cells whose chromosomes have the same allele of a given gene at some locus are called homozygous with respect to that gene, while those that have different alleles of a given gene at a locus, are called the heterozygous with respect to that gene.
The chromosomal locus of a gene might be written 3p22.1, where
- 3 = chromosome 3
- p = p-arm (short arm)
- 22 = region 2, band 2 (read as "two, two", not "twenty-two)
- 1 = sub-band 1
Thus, the entire locus is read as "three P two two point one."
The cytogenetic bands are counting from the centromere out toward the telomeres.
|3||The chromosome number.|
|p||The position is on the chromosome's short arm (a common apocryphal explanation is that the p stands for petit in French); q indicates the long arm (chosen as next letter in alphabet after p; alternatively it is sometimes said that q stands for queue meaning tail in French).|
|22.1||The numbers that follow the letter represent the position on the arm: region 2, band 2, sub-band 1. The bands are visible under a microscope when chromosome is suitably stained. Each of the bands is numbered, beginning with 1 for the band nearest the centromere. Sub-bands and sub-sub-bands are visible at higher resolution.|
A range of loci is specified in a similar way. For example, the locus of gene OCA1 may be written "11q1.4-q2.1", meaning it is on the long arm of chromosome 11, somewhere in the range from sub-band 4 of region 1 to sub-band 1 of region 2.
The ends of a chromosome are labeled "pter" and "qter", and so "2qter" refers to the terminus of the long arm of chromosome 2.
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