Eleonora Gonzaga may refer to:
- Eleonora Gonzaga, Duchess of Urbino (1493–1570), daughter of Francesco II Gonzaga; wife of Francesco Maria I della Rovere, Duke of Urbino
- Eleonora Gonzaga (1598–1655), daughter of Vincenzo I Gonzaga & Eleonora de' Medici; wife of Ferdinand II, Holy Roman Emperor
- Eleonora Gonzaga (1630–1686), great-niece of previous, daughter of Charles II Gonzaga; wife of Ferdinand III, Holy Roman Emperor
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