The 1968–69 Mitropa Cup was the 29th season of the Mitropa football club tournament. It was won by Inter Bratislava who beat Sklo Union Teplice in the two-legged final 4–1 on aggregate.
| Tournament details | |
|---|---|
| Teams | 16 |
| Final positions | |
| Champions |  Inter Bratislava (1st title) |
| Runners-up | Sklo Union Teplice |
| Tournament statistics | |
| Matches played | 30 |
| Goals scored | 100 (3.33 per match) |
Round of 16 edit
| Team 1 | Agg. | Team 2 | 1st leg | 2nd leg |
|---|---|---|---|---|
Honvéd 
|
0–1 |  Željezničar
|
0–1 | 0–1 |
| Tatabányai Bányász
|
3–6 | Sklo Union Teplice
|
3–3 | 0–3 |
| Budapest Honvéd
|
2–2 (a) |  Cagliari
|
1–0 | 1–2 |
| Inter Bratislava
|
3–1 | Palermo
|
3–0 | 0–1 |
| Vasas
|
6–4 |  Sturm Graz
|
4–3 | 2–1 |
| Atalanta
|
3–9 | Red Star Belgrade
|
2–4 | 3–5 |
| Vardar
|
2–5 | Admira Wien
|
2–2 | 0–3 |
| Baník Ostrava
|
5–3 | Hajduk Split
|
4–1 | 1–2 |
Quarter-finals edit
| Team 1 | Agg. | Team 2 | 1st leg | 2nd leg |
|---|---|---|---|---|
| Željezničar
|
5–1 | Baník Ostrava
|
1–1 | 4–0 |
| Red Star Belgrade
|
3–5 | Vasas
|
1–2 | 2–3 |
| Wiener Sport-Club
|
1–3 | Sklo Union Teplice
|
1–1 | 0–2 |
| Admira Wien
|
3–3 (a) | Inter Bratislava
|
2–2 | 1–1 |
Semi-finals edit
| Team 1 | Agg. | Team 2 | 1st leg | 2nd leg |
|---|---|---|---|---|
| Inter Bratislava
|
3–2 | Vasas
|
2–2 | 1–0 |
| Željezničar
|
2–3 | Sklo Union Teplice
|
1–1 | 1–2 |
Final edit
| Team 1 | Agg. | Team 2 | 1st leg | 2nd leg |
|---|---|---|---|---|
| Inter Bratislava
|
4–1 | Sklo Union Teplice
|
4–1 | 0–0 |